A team led by Prof Sarah Tishkoff of the University of Pennsylvania have published in Cell (August 2012) a study that sequenced the whole genomes of five individuals in each of three different hunter-gatherer populations at > 60× coverage: Pygmies from Cameroon and Khoesan-speaking Hadza and Sandawe from Tanzania. The study reveals genetic signs of natural selection in human populations. Compared with agricultural and pastoral populations, the hunter-gatherer populations showed distinct DNA patterns in genes involved in immunity, metabolism, smell, and taste, suggesting that the populations adapted to specific pathogens, food sources, and other local environmental factors. Moreover, the researchers identified several candidate genes that could be responsible for short stature in Pygmies. In addition, they found evidence of ancient interbreeding between the ancestors of modern Africans and another hominin lineage. Link to the paper here.
4 million variants identified in African hunter-gatherers, many of which are novel